Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAVPAVSPQPILAPLTPAAIFLVATIGAD--GEATVHDALSKISGLVRAIGFRDPTKHLSVVVSIGSDAWDRLFAGP-RPTELHPFVELTGPRHTAPATPGDLLFHIRAETMDVCFELAGRILKSMGDAVTVVDEVHGFRFFDNRDLLGFVDGTENPSGPI-AIKATTIGDEDRNFAGSCYVHVQKYVHDMASWESLSVTEQERVIGRTKLDDIELDDNAKPANSHVALNVITDDDGTERKIVRHNMPFGEVGKGEYGTYFIGYSRTPTVTEQMLRNMFLGDPAGNTDRVLDFSTAVTGGLFFSPTIDFLDHPPPLPQAATPTLAAGSLSIGSLKGSPR |
| 2GVK Chain:A ((12-317)) | -----HIPQDVAGKQGENVIFIVYNLTDSPDTVDKVKDVCANFSAMIRSMRNRFPDMQFSCTMGFGADAWTRLFPDKGKPKELSTFSEIKGEKYTAVSTPGDLLFHIRAKQMGLCFEFASILDEKLKGAVVSVDETHGFRYMDGKAIIGFVDGTENPAVDENPYHFAVIGEEDADFAGGSYVFVQKYIHDMVAWNALPVEQQEKVIGRHKFNDVELSDEEKPGNAHNAVTNIG----DDLKIVRANMPFANTSKGEYGTYFIGYASTFSTTRRMLENMFIGSPAGNTDRLLDFSTAITGTLFFVPSYDLLGELGE------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GVK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -134076 for 2534 contacts (-52.9/contact) +
2D Compatibility (PS) -32558 + (NN) -22184 + (LL) 972
1D Compatibility (HY) -28000 + (ID) 7300
Total energy: -223146.0 ( -88.06 by residue)
QMean score : 0.544
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