Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPTGSVTVRVPGKVNLYLAVGDRREDGYHELTTVFHAVS---LVDEVTVRNADVLSLELVGEGADQLPT-DERNLAWQAAELMAEHVGRAPDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLGS---------DVPFALHGGTA-LGTGRGEELATVLSRNTFHWVLAFADSGLLTSAVYNELDRLREVGDPP-RLGEPGPVLAALAAGDPDQLAPLLGNEM-QAAAVSLDPALARALRAGVEAGALAGIVSGSGPTCAFLCTSASSAIDVGAQLSGA---GVCRTVRVATGPVPGARVVSAPTEV |
| 4RPF Chain:A ((1-309)) | ---SMVKIYAPASIGN----VSV---GFDVLGAAVSPIDGTLLGDCVSVTAAERFSLHNEGRFVSKLPDDPKQNIVYQCWERFCQEMGKEIPVAMVLEKNMPIGSGLGSSACSVVAGLMAMNEFCGQPLDKVTLLGMMGELEGRVSGSIHFDNVAPCYLGGMQLILEQEGYISQDVPGFSDWLWVMAYPGIKVSTAEARAILPAQYRRQDCITHGRNLAGFIHACHTQQPDLAAKMMKDVIAEPYRTQLLPGFAAARQAAQDIGALACGISGSGPTLFAVCNDQATAQRMAGWLQNHYLQNDEGFVHICRLDTAGARLL------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RPF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -159099 for 2471 contacts (-64.4/contact) +
2D Compatibility (PS) -31712 + (NN) -14387 + (LL) 1176
1D Compatibility (HY) -13200 + (ID) 3300
Total energy: -220522.0 ( -89.24 by residue)
QMean score : 0.420
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