Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSPLAPVGVFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPEIRAHALAIGDDLVGRGVKAL-VIACNSASSACLRDARERYQVPVVEVILPAVRRAVAATRNGRIGVIGTRATIT-SHAYQDAFAAARDTEITAVACPRFVDFVERGVTSGRQVLGLAQGYLEPLQRAEV--DTLVLGCTHYPLLSGLIQLAMGENVTLVSSAEETAKEVVRVLTEIDLLRPHDAPPATRIFEATGDPEAFTKLAARFLGPVLGGVQPVHPSRIH
2JFN Chain:A ((20-246))
---PRPTVLVFDSGVGGLSVYDEIRHLLPDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGVV-PAIKPAARLTANGIVGLLATRGTVKRSYTHELIARFANECQIEMLGSAEMVELAEAKLHGEDVSLDALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVLPEGTRLVDSGAAIARRTAWLLE-------HEAPDA-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -188319 for 1924 contacts (-97.9/contact) +
2D Compatibility (PS) -24416 + (NN) -11886 + (LL) 2888
1D Compatibility (HY) -13600 + (ID) 4000
Total energy: -239333.0 ( -124.39 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_2JFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFN-query.scw
PDB file :
Tito_Scwrl_2JFN.pdb
: