Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMPLILLPAVDVVEGRAVRLVQGKAGSQTEY-GSAVDAALGWQRDGAEWIHLVDLDAAFGR-GSNHELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHG-DQVAVGLDVQII-DGEHRLRGRGWETDGG-DLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADR-TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALAAVRD
5A5W Chain:A ((1-243))
----MIIPALNLIDGTVVRLHQGDYARQRDYGNDPLPRLQDYAAQGAGVLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRTEEDVAALLKAGVARVVIGSTAVKSPDVVKGWFERFGAQALVLALDVRIDEHGTKQVAVSGWQENSGVSLEQLVETYLPVGLKHVLCTDISRAGTLAGSNVSLYEEVCARYPQIAFQSSGGIGDIDDIAALR---GTGVRGVIVGRALLEGKFTVKEAIQCWQ-
General information:
TITO was launched using:
RESULT:
Template:
5A5W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144611 for 2051 contacts (-70.5/contact) +
2D Compatibility (PS) -26522 + (NN) -15208 + (LL) 656
1D Compatibility (HY) -25600 + (ID) 3800
Total energy: -215085.0 ( -104.87 by residue)
QMean score : 0.664
(partial model without unconserved sides chains):
PDB file :
Tito_5A5W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5A5W-query.scw
PDB file :
Tito_Scwrl_5A5W.pdb
: