Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAYKTVVVGTDG-SDSSMRAVDRAAQIAGA-DAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGAKNVEE--RPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTT
3DLO Chain:A ((22-155))
-MIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTK---D----E---D--IIEAKETLSWAVSIIRKEGAE-GEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICIK--
General information:
TITO was launched using:
RESULT:
Template:
3DLO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61706 for 1013 contacts (-60.9/contact) +
2D Compatibility (PS) -14108 + (NN) -2069 + (LL) 996
1D Compatibility (HY) -3200 + (ID) 1750
Total energy: -81837.0 ( -80.79 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_3DLO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DLO-query.scw
PDB file :
Tito_Scwrl_3DLO.pdb
: