Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPDSGQLGAADTPLRLLSSVHYLTDGELPQLYDYPDDGTWLRANFISSLDGGATVDGTSGAM-AGPGDRFVFNLLRELADVIVVGVGTVRIEGYSGVRMGVVQRQHRQARGQSEVPQLAIVTRSGRLDRDMAVFTR--TEMAPLVLTTTAVADDTRQRLAGLAEVIA----CSGDDPGTVDEAVLVSQLAARGLRRILTEGGPTLLGTFVERDVLDELCLTIAPYVVGGLARRIVTGPG--QVLTRMRCA-HVLTDDSGYLYTRYVKT- |
2P4G Chain:A ((16-263)) | -----------VTTEQIVYGA---------LPLTTINEPECRAIAITSINGSATLSGVSG-PMGDQTDADLLIQLRGWADAIVVGAETARKENYGPVVLPHGIKNQRQKLGRCGLPKLTLLSKSLYFDFSSELFSPDLPSELSPLVITQQPANNSEQWDQRLQKLIDVGVEVIVAPTSTNPLKIAFDALHARRLKKISIEGGPSVYRQALSLGIVDRLHLTIAPNIICPVESPLFGKISDDSFTTRLVLEMLSSSPNGLIFSRYKVIRD |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2P4G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -123181 for 1821 contacts (-67.6/contact) +
2D Compatibility (PS) -26103 + (NN) -11866 + (LL) 604
1D Compatibility (HY) -8400 + (ID) 2900
Total energy: -171846.0 ( -94.37 by residue)
QMean score : 0.410
|
|
|