Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGS--------GDDIAAQTRDALRRIEIALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVGSAVADRNSGAGPKDPSPAGG
2DYY Chain:A ((3-125))
-----EVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKD-NDFAKMNEVYAEYFGESKPARVAVEVSRLP-KDVLIEIEAIAYK---------------------
General information:
TITO was launched using:
RESULT:
Template:
2DYY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53635 for 849 contacts (-63.2/contact) +
2D Compatibility (PS) -12639 + (NN) -5435 + (LL) 80
1D Compatibility (HY) -8400 + (ID) 1900
Total energy: -81929.0 ( -96.50 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_2DYY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DYY-query.scw
PDB file :
Tito_Scwrl_2DYY.pdb
: