Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIDIVTIFPACLDPLRQ-SLPGKAIESGLVDLNVHDLRRWTHDVHHSVDDAPYGGGPGMVMKAPVWGEAL---DEICSSETLLIVPTPAGVLFTQATAQRWTTESHLVFACGRYEGIDQRVVQDAARRMRVEEVSIGDYVLPGGESAAVVMVEAVLRLLAGVLGNPASHQDDSHSTGLDGLLEGPSYTRPASWRGLDVPEVLLSGDHARIAAWRREVSLQRTRERRPDLSHPD
4YQ4 Chain:A ((9-231))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEID----EEWSIGDYVLTGGELPAMTLIDAVARFIPGVLG-------DSFA---DGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPEL----
General information:
TITO was launched using:
RESULT:
Template:
4YQ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124877 for 1525 contacts (-81.9/contact) +
2D Compatibility (PS) -23059 + (NN) -9441 + (LL) 440
1D Compatibility (HY) -20400 + (ID) 4550
Total energy: -181887.0 ( -119.27 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_4YQ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YQ4-query.scw
PDB file :
Tito_Scwrl_4YQ4.pdb
: