Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEAFHTHSGIGVPLRRSNVDTDQIIPAVFLKRVTRTGFEDGLFAGWRSDPAFVLNLSPFDRGSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQDDVELLWKLIEQSPGLEITANLQDRIITAATVVLPFKIDDHSAWRLLEGLDDIALTLRKLDEIEAFEGACAYWKPRTLPAP
1V7L Chain:A ((1-162))
MITTGKVWKFG-----DDISTDEITPGRYNLTKDPKELAKIAFIEVR--PDFARNVRP---GDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLGKTEGLK---------DGDLVTVNWETGEVRKGDEILMFEPLEDFLLEIVRE-----------------GGILEYIRRRGDLCI
General information:
TITO was launched using:
RESULT:
Template:
1V7L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115278 for 1323 contacts (-87.1/contact) +
2D Compatibility (PS) -17260 + (NN) -7389 + (LL) 3356
1D Compatibility (HY) -7600 + (ID) 2250
Total energy: -146421.0 ( -110.67 by residue)
QMean score : 0.303
(partial model without unconserved sides chains):
PDB file :
Tito_1V7L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V7L-query.scw
PDB file :
Tito_Scwrl_1V7L.pdb
: