Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVVAEGAYPYCRLTDQPLSVDEVLAAVSG-PEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSSTGAEWVGDRP---------
1FM0 Chain:E ((2-150))
--------AETKIVVGPQPFSVGEEYPWLAERDEDGAVVTFTGKVR-------VNALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEARESDQQAAKRW
General information:
TITO was launched using:
RESULT:
Template:
1FM0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100185 for 916 contacts (-109.4/contact) +
2D Compatibility (PS) -14205 + (NN) -5665 + (LL) 560
1D Compatibility (HY) -8000 + (ID) 2400
Total energy: -129895.0 ( -141.81 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_1FM0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FM0-query.scw
PDB file :
Tito_Scwrl_1FM0.pdb
: