Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHSTG--GGRLLALACV-DGHGSVLMPCGRCRQVLLEHGGSELLI-----DHPVRPRRLGDLLPDAFGLDDLPRERR
3DMO Chain:D ((28-137))
----------------------PYSNFKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAVVGETHGPI-APCGACRQVMIELGKPTLEVVLTNMQGDVRVTSAGDLLPDAFYL--------
General information:
TITO was launched using:
RESULT:
Template:
3DMO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72849 for 705 contacts (-103.3/contact) +
2D Compatibility (PS) -11523 + (NN) -6352 + (LL) 1884
1D Compatibility (HY) -8000 + (ID) 2600
Total energy: -99440.0 ( -141.05 by residue)
QMean score : 0.326
(partial model without unconserved sides chains):
PDB file :
Tito_3DMO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DMO-query.scw
PDB file :
Tito_Scwrl_3DMO.pdb
: