Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKRFWENVGKPNDTTDGRGTTSLAMTPISQTPGLLAEAMVDLGAIEHNVRVLREHAG-HAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAPVL-AWLHPPGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVD-TGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQARE-QGV--RFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVPALGDMGLVPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGGRLEVLINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTAQDWADLVGTIHYEVVTSPRGRITRTYREAENR |
| 4DYJ Chain:A ((39-409)) | ------------------------------VQNSNAWVEVSASALQHNIRTLQAELAGKSRLCAVLKADAYGHGIGLVMPSIIAQGVPCVAVASNEEARVVRASGFTGQLVRVRLASL-SELEDALQYDMEELVGSAEFARQVDAIAARHGKTLRIHMALNSSGMSRNGVEMATWSGRGEAL-QITDQKHLKLVALMTHFAVEDKDD---VRKGLAAFNEQTDWLIKHAKLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFGDTVPA---RTEYQRAMQFKSHVAAVHSYPAGNTVGYDRTFTLARDSRLANITVGYSDGYRRVFTNKGHVLINGHRIPVVGKVSMNTLMVDVTDF-PDVKGGNEVVLFGKQAGGEITQAEMEEINGALLADLYTVWGSSNPKILVD---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4DYJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202122 for 3050 contacts (-66.3/contact) +
2D Compatibility (PS) -39589 + (NN) -12393 + (LL) 1372
1D Compatibility (HY) -14800 + (ID) 5550
Total energy: -273082.0 ( -89.54 by residue)
QMean score : 0.364
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