Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVVGAVLPEL-KLYGDPTFIVSTALATRDFQDVHHDRDKAVAQGSKDIFVNILTDTGLVQRYVTDWA--------GPSALIKSIGLRLGVPWYAYDTVTFSGEVTAVND----GLITVKVVGRNT-LGDHVTATVELSMRDS
4RLJ Chain:A ((7-146))
--IVGMHYRYPDHYEVEREKIREYAVAVQNDDAWYFEEDGAAELGYKGLLAPLTFICVFGYKAQAAFFKHANIATAEAQIVQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTNEEGDLVQETYTTLAGRA-
General information:
TITO was launched using:
RESULT:
Template:
4RLJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54082 for 904 contacts (-59.8/contact) +
2D Compatibility (PS) -13235 + (NN) 428 + (LL) 232
1D Compatibility (HY) -1200 + (ID) 1000
Total energy: -68857.0 ( -76.17 by residue)
QMean score : 0.307
(partial model without unconserved sides chains):
PDB file :
Tito_4RLJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RLJ-query.scw
PDB file :
Tito_Scwrl_4RLJ.pdb
: