Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MNDLTLHYLYDPLCGWCYGASPLLAAACEVTGLDVRLH---GGGMMTDANRQPVG--AGLRHYVMPHDLRIAQLTGQPFGKDYFDGLLRDTSAVFDSAPPTAAVLAAEALDGLGAAMLARIQRAHYVEGRRIAERPVLLELGAELGLGEGFAEAF-DACSGEPLRAHFADSRRLMNRLGAAGFPTFALERDGRLQVLDTGRYLGQPDDWRAFLETQLRLAGGSGAVGGAAAPLCRIDGCA
1R4W Chain:A ((2-222))
GPAPRVLELFYDVLSPYSWLGFEVLCRYQHLWNIKLKLRPALLAGIMKDSGNQPPAMVPHKGQYILKEIPLLKQLFQVPM--SVPKDFFGEHVKKGTVNAMRFLTAVSMEQPEMLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTGAACKYGAFGLPTTVAHVDG-----KTYMLFGS--DRMELLAYLL----GEKWMGPVPPTL-------
General information:
TITO was launched using:
RESULT:
Template:
1R4W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117051 for 1704 contacts (-68.7/contact) +
2D Compatibility (PS) -22956 + (NN) -8657 + (LL) 1000
1D Compatibility (HY) -8000 + (ID) 1850
Total energy: -157514.0 ( -92.44 by residue)
QMean score : 0.342
(partial model without unconserved sides chains):
PDB file :
Tito_1R4W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R4W-query.scw
PDB file :
Tito_Scwrl_1R4W.pdb
: