Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRVNKTVLVLVALVALVLGLTVHKVLTAQRQADPTVLLDAGIVILPQTRKVPALEFTNQDGQAVSTASLKGRWHLLFFGYTFCPDV-CPTTLAQLRELQGKLPQEVRDDLQVVFVSVDPNRDTPQQIKQYLGYFNAGFQGLTGTPENIQKLANAMSIPYIPAD-TSKPNYTVDHSGNLVIIGPDGEQHGFIRAPL--NNAKLEAQLPGVLKPQA
2K6V Chain:A ((9-172))
--------------------------------------------TRLLNPKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCP-DVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVV-KEGRLVLLYSPDKAEATDRVVADLQALL----
General information:
TITO was launched using:
RESULT:
Template:
2K6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91428 for 1236 contacts (-74.0/contact) +
2D Compatibility (PS) -17540 + (NN) -9872 + (LL) 4852
1D Compatibility (HY) -10400 + (ID) 2450
Total energy: -126838.0 ( -102.62 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_2K6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K6V-query.scw
PDB file :
Tito_Scwrl_2K6V.pdb
: