Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQIEFFFDFGSPTTYLAWTQLPRIAAAHG--ASIAWRPMLLGGVFKATGNHSPIEVPAKGRYTLHDLARYAKRYGVPLAFNPAFPINTLTLMRGAQGYLGGEGFQPYLKAVFEALWVRQQ----NLGKPEVVAQVLAEAGFDPDEFLRLVGDEQVKEGLKATTEEAVRRGVFGAPSFFVGDQLFFGQDRLDFVAEVLAG
2REM Chain:A ((26-180))
-KIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGG-------------------------------------------VWDPFARAYLAADVLGVAKRSHTAMFEAIHEKGSVPIQNV-GPDELAVFYAGYGVQPDRFVATFNGPEVEKRFQAARAYALKVRPVGTPTIVVNGRYMVTGHDFEDTLRITDY
General information:
TITO was launched using:
RESULT:
Template:
2REM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99948 for 1169 contacts (-85.5/contact) +
2D Compatibility (PS) -16135 + (NN) -4445 + (LL) 2392
1D Compatibility (HY) -5600 + (ID) 1300
Total energy: -125036.0 ( -106.96 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_2REM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2REM-query.scw
PDB file :
Tito_Scwrl_2REM.pdb
: