Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPREHGKRSIDNETRSALKRQRPAVIWLTGLSGAGKSTIASALELALFEQKKHTFLLDGDDLRLGLCRNLGYSDEDRTENIRRIAEVAKILLEAGLIVIVATISPFSRDRRLSRELIGIEHFIEVFVDTPLSECERRDPKGLYRKARSGKIENFTGIDSIYETPAQPNITIDTLSEDPDLAVKRIISYLETNQPA
5CB8 Chain:B ((22-189))
--------------------QQRGVTIWLTGLSGAGKTTITHALEKKLRDSGYRLEVLDGDVVRTNLTKGLGFSKEDRDTNIRRIGFVSHLLTRNGVIVLVSAISPYAAIRQEVKHTIG--DFLEVFVNAPLAVCEERDVKGLYAKARSGEIKGFTGIDDPYEPPTNPDVECRTDLEELDESVGKIWQKLVDLKYI
General information:
TITO was launched using:
RESULT:
Template:
5CB8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99462 for 1376 contacts (-72.3/contact) +
2D Compatibility (PS) -19084 + (NN) -10497 + (LL) 1168
1D Compatibility (HY) -12800 + (ID) 4200
Total energy: -144875.0 ( -105.29 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_5CB8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5CB8-query.scw
PDB file :
Tito_Scwrl_5CB8.pdb
: