Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLKGKTALVTGSTSGIGLGIALSLAEAGADLLLNGFGEVDAALAQVRA-----RGVRAEHHPADLSSPEQIGELMAFAERTFGGVDILVNNAGIQYVAPVQEFPTERWDAIIAINLSSVFHTTRLALPGMLARGWGRIVNIASTHGLVASAGKSAYVAAKHGVLGLTKSVALETARTPVTCNAICPGWVLTPLVQKQIDARTAEGVSPEQAEHDLLAEKQPSLAFVTPEQLGGLTLFLCSEAADQVRGAAWNMDGGWVAQ
2ZTV Chain:B ((2-260))
--LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA-AEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEK-------------TAARELLSEKQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGWTAR
General information:
TITO was launched using:
RESULT:
Template:
2ZTV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153993 for 2055 contacts (-74.9/contact) +
2D Compatibility (PS) -25546 + (NN) -6133 + (LL) 932
1D Compatibility (HY) -21600 + (ID) 7600
Total energy: -213940.0 ( -104.11 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_2ZTV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZTV-query.scw
PDB file :
Tito_Scwrl_2ZTV.pdb
: