Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MTHSPVKQ--------MLK---EAGLKMSLARLKVIDALWEASGEQGRVPIRTLHRRLSETGTPLSLVSIRQVLGRLVESGLVTLDEQDVYSPGK-ASWGGAAGSAAPERRAAANEQRL--------
3LFK Chain:A ((2-123))
SHMSAMAESKVLVKGTPFNKPVIKGKLENNYDMSQDEVSLLLFLKTHGG---KIP---LYRIKNETGLK----DPESVLKNLMDYGFALEDKERLGEKIVLTSEGEFVAQAIRVRDEELRLKEMKQKKNVNR
General information:
TITO was launched using:
RESULT:
Template:
3LFK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15324 for 627 contacts (-24.4/contact) +
2D Compatibility (PS) -10516 + (NN) -3283 + (LL) 924
1D Compatibility (HY) -4400 + (ID) 1200
Total energy: -33799.0 ( -53.91 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_3LFK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LFK-query.scw
PDB file :
Tito_Scwrl_3LFK.pdb
: