Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRALLLSGCLALVLLTQQAAAQTLLVVGDSISAALGLD-TSQGWVALLQKRLADEG-YDYRVVNASISGDTSAGGLARLPALLAEEKPALVVIELGGNDGLR--GMAPAQLQQNLASMAQKARAEGAKVLLLGIQLPPNY-----GPRYIEAFSRVYGAVAAQEKTALVPFFLEGV--GGVQGMMQADGIHPALAAQPRLLENVWPTLKPLL
1YZF Chain:A ((2-190))
---------------------RKIVLFGDSITAGYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRLNKEVLIEKPDEVVIFFGANDASLDRNITVATFRENLETMIHEIGS--EKVILITPPYADSGRRPERPQTRIKELVKVAQEVGAAHNLPVIDLYKAMTVYPGTDEFLQADGLHFSQVGYELLGALIVREIKGRL
General information:
TITO was launched using:
RESULT:
Template:
1YZF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105437 for 1462 contacts (-72.1/contact) +
2D Compatibility (PS) -19371 + (NN) -9512 + (LL) 2532
1D Compatibility (HY) -12800 + (ID) 2450
Total energy: -147038.0 ( -100.57 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_1YZF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YZF-query.scw
PDB file :
Tito_Scwrl_1YZF.pdb
: