Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATQGVFTLPANTRFGVTAFANSSGTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG
2JDM Chain:D ((2-115))
-ATQGVFTLPANTRFGVTAFANASGTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG
General information:
TITO was launched using:
RESULT:
Template:
2JDM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48411 for 844 contacts (-57.4/contact) +
2D Compatibility (PS) -13035 + (NN) -10678 + (LL) 208
1D Compatibility (HY) -14000 + (ID) 5650
Total energy: -91566.0 ( -108.49 by residue)
QMean score : 0.662
(partial model without unconserved sides chains):
PDB file :
Tito_2JDM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JDM-query.scw
PDB file :
Tito_Scwrl_2JDM.pdb
: