Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTATSDLIESLISYSWDDWQVTRQEARRVIAAIRNDNVPDATIAALDKSGSLIKLFQRVGPPELARSLIASIAGRTTMQRYQARNA------LIRSLINNPLGTQ-TDNWIYFPTITFFDICADLADAAGRLG------FAAAGATGVASQAIQGPFSGVGATGVNPTDLPSIAFGDQLKLLNKDPATVTKYSNPLGDLGAYLSQLSPQD-KLNQAQTLVGQPISTLFPDAYPGNPPSRAK---VMSAAARKYDLTPQLIGAIILAEQRDQTRDEDAKDYQAAVSIKSANTSIGLGQVVVSTAIKYELFTDLLGQPVRRGLSRKAVATLLASDEFNIFATARYIRYVANLASQQDLRKLPKTRGAFPSIDLRAYAGNPRNWPRDNVRALASEYTSRPWDDNLSP--GWPMFVDDAYATFLDPGMRFP-- |
| 4J3R Chain:A ((4-383)) | -----ATLPTTASSSTAVASSQLDQLANFAYNVTTDSVAGCTLQNL-RVRRDWRAFSKTQKKDYINSVLCLQKLPSRTPAHLAPGARTRYDDFVATHINQTQIIHYTGTFLAWHRYFIYEFEQALRDECSYTGDYPYWNWGADADNMEKSQVFDGSETSMSGNGEYIPNQGDIKL-----LLGNYPAIDL----PPGSGGGCVTSGPFKDYKLNLGPAALSLPGGNMTAAANPLTYNPRCMKRSLTTEILQRYNTFPKIVELILDSD--------DIWDFQMTMQGVPGSGSIG-----VHGGGHYSMG----GDPGR--------DVYVSPGDTAFWLHHGMIDRVWWIWQNLDLRKRQNAISGTGT-----FMNNP-----------ASPNTTLDTVIDLGYANGGPIAMRDLMSTTAGP-FCYVYL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J3R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -66801 for 2918 contacts (-22.9/contact) +
2D Compatibility (PS) -36526 + (NN) -4214 + (LL) 3336
1D Compatibility (HY) -5600 + (ID) 3400
Total energy: -113205.0 ( -38.80 by residue)
QMean score : 0.262
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