Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALQRTLSIIKPDAVSKNVIGEILTRFEKAGLRVVAAKMVQLSEREAGGFYAEHKERPFFKDLVSFMTSGPVVVQVLEGEDAIAKNRELMGATDPKKADAGTIRADFAVSIDE---NAVHGSDSEASAAREIAYFFAATEVCERIR
2DXD Chain:B ((8-150))
---ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEYPR
General information:
TITO was launched using:
RESULT:
Template:
2DXD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62013 for 1062 contacts (-58.4/contact) +
2D Compatibility (PS) -14895 + (NN) -2475 + (LL) 528
1D Compatibility (HY) -14800 + (ID) 3600
Total energy: -97255.0 ( -91.58 by residue)
QMean score : 0.435
(partial model without unconserved sides chains):
PDB file :
Tito_2DXD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DXD-query.scw
PDB file :
Tito_Scwrl_2DXD.pdb
: