Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSELNLTTDEARVSYGIGRQLGDQLRENPVPGMTLDAVLAGLSDAFAGIDSRVSGEALSASFQVIRERMQAEAQAKAEAAAGEGRAYLAENAKREGVTVLPSGLQFEVLSTGEGAK-PSREDTVRTHYHGTLIDGTVFDSSYQRGQPAEFPVGG--VIAGWVEALQLMNAGSKWRLHVPSELAYGGQA-VGSIPPHSVLVFDVELLEIL
1FKJ Chain:A ((1-106))
------------------------------------------------------------------------------------------------------GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL-
General information:
TITO was launched using:
RESULT:
Template:
1FKJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59920 for 730 contacts (-82.1/contact) +
2D Compatibility (PS) -11102 + (NN) -2429 + (LL) 7204
1D Compatibility (HY) -6800 + (ID) 2350
Total energy: -75397.0 ( -103.28 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_1FKJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FKJ-query.scw
PDB file :
Tito_Scwrl_1FKJ.pdb
: