Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSARGVLRGLHY-QIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDAPLLSEKDRQGKAFADADCFP
4HN1 Chain:B ((13-177))
--------------EPVIHSDHRGRSHEWFRGESFRQAFGHDFPVAQVNVAVSHRGALRGINYTEIPPGQAKYSVCVRGAGLDVVVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDDATLVFLCSSGYAPAREHSVNPLDPDLGIAWPDDIEPLLSDRDENAPTLATAE---
General information:
TITO was launched using:
RESULT:
Template:
4HN1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50419 for 1185 contacts (-42.5/contact) +
2D Compatibility (PS) -17120 + (NN) -4665 + (LL) 1628
1D Compatibility (HY) -7600 + (ID) 2900
Total energy: -81076.0 ( -68.42 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_4HN1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HN1-query.scw
PDB file :
Tito_Scwrl_4HN1.pdb
: