Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSGNRGVVYLGPGKVEVQNIPYPKMQDPQGRQIDHGVILRVVSTNICGSDQHM------VRGRTTAPEGLVLGHEITGEVVEIGRGVETMKIGDLVSVPFNVACGHCRTCKEQHTGVCLTVNPARAGGAYGYVDMGGWVGGQAEYVLVP--YADFNLLKLPNREAAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASARLLGAAVVIVGDVNPTRLAHAKKQGFEIADLSKDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHSGSQQEAPATVLNSLMGITRVAGKIGIPGLYVTEDPGAVDAAAKHGALSIRFGLGWAKSHSFHTGQTPVMKYNRQLMQAIMWDRIKIADIVGVEVITLDDAPKGYGEFDAGVPKKFVIDPHNLFRAA |
| 2DQ4 Chain:B ((28-220)) | ------------------------------------ILVRVEAASICGTDLHIWKWDAWARGRIRPP--LVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCL--NTQILG-----VDRDG---GFAEYVVVPAENAWVNPKDLPFEVAAI-----LEPFGNAVHTVYAGS---GVS-GKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVN-----PLEEDL-------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2DQ4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -93265 for 1371 contacts (-68.0/contact) +
2D Compatibility (PS) -19324 + (NN) -2265 + (LL) 11220
1D Compatibility (HY) -12000 + (ID) 4000
Total energy: -119634.0 ( -87.26 by residue)
QMean score : 0.426
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