Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTPVVLITGAAGGLGRAIAKRFAQSHWRIAATDVDKEGLHALNAQV---PLDASG-VADLRSADNCHTLMSKILARTGRLDALVNAAGVWREGPVENFTEEDFDLVLGVNLKASFYMCQAAIP---YLKENQGSIVNISSDSGRQAYRGSAAYCASKAALTMLSKTLALELAEQGVRVNAVSPADIATPMLDYQAERYGMGNPDGYKRALLKDYPQGKAARFIRPEEVAELVWYLCGPQAEAITGADLAVDFGLSAGR
1W4Z Chain:B ((28-278))
----VALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHY---TEEAFDR-ITARVPIG---RYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGGL----
General information:
TITO was launched using:
RESULT:
Template:
1W4Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142349 for 2050 contacts (-69.4/contact) +
2D Compatibility (PS) -25649 + (NN) -11937 + (LL) 496
1D Compatibility (HY) -17200 + (ID) 4300
Total energy: -200939.0 ( -98.02 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_1W4Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W4Z-query.scw
PDB file :
Tito_Scwrl_1W4Z.pdb
: