Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRTLLLSALVAGALSCGYPTYEVQHDVSRVVGGQEASPNSWPWQVSLQYLSSGKWHHTCGGSLVANNWVLTAAHCISN---SRTYRVLLGRHSLSTSESGSLAVQVSKLVVHEKWNAQKLSNGNDIALVKLASPVALTSKIQTACLPPAGTILPNNYPCYVTGWGRLQTNGATPDVLQQGRLLVVDYATCSSASWWGSSVKTNMVCAGG-DGVTSSCNGDSGGPLNCQASNGQWQVHGIVSFGSTLGCNYPRKPSVFTRVSNYIDWINSVIAKN
3BG8 Chain:A ((1-237))
------------------------------IVGGTASVRGEWPWQVTLHTTSP-TQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAES--GYDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGYREGGKDACKGDSGGPLSCKH-NEVWHLVGITSWGE--GCAQRERPGVYTNVVEYVDWILEKTQA-
General information:
TITO was launched using:
RESULT:
Template:
3BG8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149160 for 1976 contacts (-75.5/contact) +
2D Compatibility (PS) -25641 + (NN) -16227 + (LL) 2280
1D Compatibility (HY) -14800 + (ID) 4100
Total energy: -207648.0 ( -105.09 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_3BG8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BG8-query.scw
PDB file :
Tito_Scwrl_3BG8.pdb
: