Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGNDSVSYEYGDYSDLSDRPVDCLDGACLAIDPLRVAPLP-LYAAIFLVGVPGNAMVAWVAGKVARRRVG-ATWLLHLAVADLLCCLSLPILAVPIARGGHWPYGAVGCRALPSIILLTMYASVLLLAALSADLCFLALGPAWWSTVQRACGVQVACGAAWTLALLLTVPSAIYRRLHQEHFPARLQCVVDYGGSSSTENAVTAIRFLFG-FLGPLVAVASCHSALLCWAARRCRPLGTAIVVGFF-----------------VCWAPYHLLGLVLTVAAPNSALLARALRAEPLIVGLALAHSCLNPMLFLYFG-RAQLRRSLPAACHW--ALRESQGQDESVDSKKSTSHDLVSEMEV------ |
4XNV Chain:A ((38-382)) | -------------------SFKCA----LTKTGFQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPKSLGRLKKKNAICISV-LVWLIVVVAISPILFYSGTGVRK-NKTITCYDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKK-YTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202139 for 2261 contacts (-89.4/contact) +
2D Compatibility (PS) -32457 + (NN) -10223 + (LL) 304
1D Compatibility (HY) -24400 + (ID) 2950
Total energy: -271865.0 ( -120.24 by residue)
QMean score : 0.151
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