Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------MQPSPPPTELVPSERAVVLLSCALSALGSGLLVATHALWPDLRSRARRLLL-----FLSLADLLSAASYFYGVLQNFAGPSW------DCVLQGALSTFANTSSFFWTVAIALYLYLSIVRAARGPRTDRLLWAFHVVSWGVPLVITVAAVALKKIGYDASDVSVGWCWIDLEAKDHVLWMLLTGKLWEMLAYVLLPLLYLLVRKHINRAHTALSEYRPILSQEHRLLRH--------SSMADKKLVLIPLIFIGLRVWSTVRFVLTLCGS-PAVQTPVLVVLHGIGNTFQGGANCIMFVLCTRAVRTRLFSLCCCCCSSQPPTKSPAGTPKAPAPSKPGE-SQESQGTPGELPST----- |
| 4L8T Chain:A ((64-447)) | EYLGMLQYKREDEAKLIQNLILDLKPRGVVVNMIPGLPAHILFMCVRYADSLNDANMLKSLMNSTINGIKQVVKEHLEDFEMLSFWLSNTCHFLNCLKQYSGEEEFMKHNSPQQNKNCLNNFDLSEYRQILSDVAIRIYHQFIIIMEKNIQPIIVPGMLEYE-------SLQGYTMTSVLQQLSYFYTTMCQNGL---DPELVRQAVKQLFFLIGAVTLNSLFL--RKDMCSCRKGM-QIRCNISYLEEWLKDKNLQNSLAKETLEPLSQAAWLLQVKKTTDSDAKEIYERCTSLSAVQIIKILNSYTPIDDFEKRVTPSFVRKVQALLNSRE--------DSSQLMLDTKYLFQVTFPFTPSPHALEMIQIPSSFKLGFLNRL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4L8T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -190000 for 2286 contacts (-83.1/contact) +
2D Compatibility (PS) -33104 + (NN) -26975 + (LL) 1820
1D Compatibility (HY) -7600 + (ID) 2350
Total energy: -258209.0 ( -112.95 by residue)
QMean score : 0.335
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