Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | --MSIINTSYVEITTFFLVGMPGL---EYAHIWISIPICS------MYLIAILGNGTILFIIKTEPSLHEPMYYFLSMLAMSDLGLSLSSLPTVLSIFLFNAPEISSNACFAQEFFIHGFSVLESSVLLIMSFDRFLAIHNPLRYTSILTTVRVAQIGIVFSF------KSMLLVLPFPFTLRNLRYCK-KNQLSHSYCLHQDVMKLACSDNRIDVIYGFFGALCLM------VDFILIAVSYTLILKTVL---GIASKKEQLKALNTCVSHI-----CAVIIFYLPIINLAVVHRFARHVSPLINVLMANVLLLVPPLTNPIVYCVKTKQIRVRVVAKLCQRKI- |
4RKS Chain:A ((21-337)) | TYRSIGSTAYPTIGVVLLGGIANPVTRTPLHTSAGIAYSDSCGSIRSETRIYADEATHIYFNGTESTDDNRSVRRVLDRYSSVFEEAFGTKTVSYSSQNFGILSGSSDA---------GAASIGAAILGLKPDLDPHDVENDLRAVSE-SAGRSLFGGLTITWSDGFHAYTEKILDPEAFSGYSIVAFAFDYQRNPSDVIHQNIVRSDLYPARKKHADEHAHMIKEYAKTNDIKGIFDLAQEDTEEYHSILRGVGVNVIRENMQKLISYLKLIRKDYWNAYIVTGGSNVYVAVESENADRLFSIENTF-------------------GSKKKMLRIVGGAWHRRPE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RKS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -322020 for 2392 contacts (-134.6/contact) +
2D Compatibility (PS) -29957 + (NN) -4465 + (LL) 2892
1D Compatibility (HY) 5600 + (ID) 2500
Total energy: -350450.0 ( -146.51 by residue)
QMean score : 0.310
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