Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------MMDNHSSATEFHLLGFPGSQGLHHILFAIFFFFYLVTLMGNTVIIVIVCVDKRL-QSPMYFFLSHLSTLEILVTTIIVPMMLWGLL----FLGCRQYLSLHVSL-NFSCGTMEFALLGVMAVDR-------YVAVCNPLRYNIIMNSS--TCIWVVIVSWVFGFLSEIWPIYATFQFTFRKSNSLDHFYCDRGQLLKLSCDNTLLTEFILFLMAVFILIGSLIPTIVSYTYIISTILKIPSASGRRKAFSTFASHFTCVVIGYGSCLFLYV-KPKQTQGVEYNKIVSLLVSVLTPFLNPFIFTLRN-----------DKVKEALRDGMKRCCQLLKD------------------- |
| 4HKA Chain:A ((3-347)) | GKIYGEYLMLDKLLDAQCMLSEED--KRPVHDEHLFIITHQAYELWFKQIIFEFDSIRDMLDAEVIDETKTLEIVKRLNRVVLILKLLVDQVPILETMTPLDFMDFRKYLAPASGFQSLQFRLIENKL-GVLTEQRVRYNQKYSDVFSDEEARNSIRNSEKDPSLLELVQRWLERTP---GLEESGFNFWAKFQESVDRFLEAQVQSAMEEPVEKAKNYRLMDIEKRREVYRSIF-----------------DPAVHDALVRRGDRRFSHRALQGAIMITFYRDEPRFSQPHQLLTLLMDIDSLITKWRYNHVIMVQRMIGSQQLGTGGSSGYQYLRSTLSDRYKVFLDLFNLSTFLIPREAIPPLDE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4HKA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -236984 for 1914 contacts (-123.8/contact) +
2D Compatibility (PS) -28755 + (NN) -1493 + (LL) 2264
1D Compatibility (HY) -6400 + (ID) 1800
Total energy: -273168.0 ( -142.72 by residue)
QMean score : 0.154
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