Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKHQETTSQQYNFSIIKHGDISTPQGFTAGGMHIGLRANKKDFGWIYSSSLASSAAVYTLNQFKAAPLIVTEDTLQKSKGKLQALVVNSANANSCTGQQGIDDARQTQTWVAQQLQIPSEHVAVASTGVIGEYLPMDKIKTGTEHIKDTNFATPGAFNEAILTTDTCTKHIAVSLKIDGKTVTIGGSAKGSGMIHPNMATMLAFITTDASIESNTLHQLLKSSTDHTFNMITVDGDTSTNDMVLVMANHQVEHQILSQDHPQWETFVDAFNFVCTFLAKAIARDGEGATKLISVNVSGAKSISDARKIGKTIVSSNLVKSAIFGEDANFGRIITAIGYSGCEIDP-KCTYVQLNQIPVVDKGMAVLFDEQAMSNTLT-HEHVTIDVQLGLGNAAATAYGCDLSYDYVRINASYRT |
| 1VRA Chain:B ((1-213)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TMLSFVTTDANIDHGHLQGALSAITNETFNRITVDGDTSTNDMVVVMASGLAENETLTPEHPDWANFYKALQLACEDLAKQIARDGEGATKLIEVEVTGAANDQEAGMVAKQIVGSDLVKTAIYGADANWGRIICAIGYSGCEVNQET-IDIAIGPIVTLKQSEPTGFSEEEATAYLKEADPVKISVNLHIGNGTGKAWGCDLTYDYVRINAGY-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VRA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -144587 for 1665 contacts (-86.8/contact) +
2D Compatibility (PS) -22239 + (NN) -5476 + (LL) 11908
1D Compatibility (HY) -19200 + (ID) 5400
Total energy: -184994.0 ( -111.11 by residue)
QMean score : 0.365
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