Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGKHLVEKMEIFKGNSKREIHKKIQLVTNEPYKITDERVTKLGIFKKQYEVTAVIMSEVAIADGRMDFQETFQKSVVKTRPKTDDLLKKEKLLEMLAAGAELAQSTPLLEERKTQEEELSSMRLELAALNRELAVKMREEREQNSDFVKFLKGRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVED--SFDLSGHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAE-----LEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV------HPDLTCFTFSSGMKSADVMTILPKLA-EIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRWLAERFVGTDRRQVVE |
| 1VMA Chain:A ((46-306)) | ---------------------------------------------------------------------------------------------------------------------------------------------ETREELEELLIQADVGVETTEYILERLEEKDG--------DALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALA--RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA-KIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEK-AEDLRPFDPEAFVEVLLSE------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VMA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -132475 for 2035 contacts (-65.1/contact) +
2D Compatibility (PS) -26636 + (NN) -11184 + (LL) 15072
1D Compatibility (HY) -12400 + (ID) 2300
Total energy: -169923.0 ( -83.50 by residue)
QMean score : 0.537
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