Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIIIIGAQASGKMTIGQEIAKQTGMTLFHN-HDSIDFVLRFM-PWS--PDSIALTESIRFKFFETFA-KTGQKMIFTIVIDFNDSRDVVFLEKIQTVFQSHNQEVLFVELETELSERLKRNRTENRLKHKPSKRDIKWSENDICLTMDYAIFNPEVAPEALTYYHKINNTCLTATETAYLIIQKINQIKEKN
2VLI Chain:A ((8-173))
--IWINGPF----THTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYASREAAGPLIVPVSISD-----TARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRD------V---NVGT----VEDRLNELR--------GEQFQTHIDTAGLGTQQVAEQIAAQVGLTLAPP
General information:
TITO was launched using:
RESULT:
Template:
2VLI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95650 for 1064 contacts (-89.9/contact) +
2D Compatibility (PS) -16311 + (NN) -6027 + (LL) 716
1D Compatibility (HY) -400 + (ID) 850
Total energy: -118522.0 ( -111.39 by residue)
QMean score : 0.351
(partial model without unconserved sides chains):
PDB file :
Tito_2VLI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VLI-query.scw
PDB file :
Tito_Scwrl_2VLI.pdb
: