Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLESLKTIVKTNSDK-KLFDGDLQVSYGEFYNLVRQDM------ASQDNRKHVISTHSLLNQLVRFVSKLCQKALPIICKPNLTHNEISRLEKE------------------------------------------VQYAPQLADFGVLSSGTTADAKLLWRSFASWSDFFSIQNAYFSVTSNSRLFIQGDFSFTGNLNLVLSLLLLGGTLVVTQK---NSVKYWQTLWEKTGVTHLYLLPSYLKLVEQYSKETALDNKTIITSSQYVSDSLLEGLYIKHPKVSVKIFYGASELNYVSWYDGR--DIRDKPQYVGEIVPNVAVRIKE-----------GRIFVKTPYSICGL-------------------SSEYCAGDYGELI-DGKLYLFGRGDDWCNQSGIKLYLPRLIEKIKTCPYIKDAVAFTKESQSHGQESHCCIVLIENQMQQECLKWLSEHFEKKYGFKHYHIVSKIPLMPSGKIDYQQLKRQLA |
| 1AMU Chain:A ((42-525)) | -HQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTS-----PKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE---RILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1AMU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -249420 for 3275 contacts (-76.2/contact) +
2D Compatibility (PS) -42236 + (NN) -13378 + (LL) 316
1D Compatibility (HY) -12000 + (ID) 3400
Total energy: -320118.0 ( -97.75 by residue)
QMean score : 0.457
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