Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAVEIIMPKLGVDMQEGEILEWKKQVGDVVNEGDVLLEIMSDKTNMEIEAEDSGVLLKITHGNGDVVPVTETIGYIGAEGEEVTEASSSENTSVEENATQVTSEPEKVEETSEPSVPAATSGEKVRATPAARKLAREMSIDLALVSGTGANGRVHREDVESFKGAQPRITPLARRIAEDQGVDIAEITGSGIRGKIVKNDVLAAMSPQAAEAPVETKATPTTEEKQLPEGVEVIKMSAMRKAISKGMTNSYLTAPSFTLNYDIDMTEMMALRKKLIDPIMAKTGLKVSFTDLIGMAVVKTLMKPEHRYLNASLINDAQEIELHNFVNIGIAVGLDDGLIVPVVHNADQMSLSDFVIASKDVIKKTQEGKLKSAEMSGSTFSITNLGMFGTKTFNPIINQPNSAILGVGATIPTPTVVD-GEIVARPIMAMCLTIDHRIVDGMNGAKFMVDLKNLMENPFGLLI |
2II3 Chain:B ((36-259)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VKGFHKAMVKTMSAA-LKIPHFGYCDEVDLTELVKLREEL-KPIAFARGIKLSFMPFFLKAASLGLL--QFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2II3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -140374 for 1723 contacts (-81.5/contact) +
2D Compatibility (PS) -24694 + (NN) -10857 + (LL) 15804
1D Compatibility (HY) -14800 + (ID) 3600
Total energy: -178521.0 ( -103.61 by residue)
QMean score : 0.478
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