Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLIGIVGTNSNKSTNRQLLQYMQQHFADKAEIELIEVKDLPLFNKPADKN-VPQVILDIAAKIEEADGVIIGTPEYDHSIPSALMSVLAWLSYGI--------YPLLNKPVMITGASYGTLGSSRAQLQLRQILNAPELKASVLPDEFLLSHSLQAFDKDGNLHDIETSQKLDAIFDDFRLFVKITGKLSNARDLLQKEAENFDWESL
3FVW Chain:A ((3-184))
KRILFIVGSFSEGSFNRQLAKKAETIIGDRAQVSYLSYDRVPF-FNQDLETSVHPEVAHAREEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA----EVFEDYRSLLP--FIRMHLVDQLTGVPINSEAWSTGILKVSAEKLAELSAQADALLSAIEN-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3FVW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68147 for 1280 contacts (-53.2/contact) +
2D Compatibility (PS) -18167 + (NN) -8443 + (LL) 1564
1D Compatibility (HY) -5200 + (ID) 1650
Total energy: -100043.0 ( -78.16 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_3FVW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FVW-query.scw
PDB file :
Tito_Scwrl_3FVW.pdb
: