Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLNDNNQKKWKNRTLTSSMEFAVTGIFTAFKEERNMRKHLVSAILVILAGLTF-QVSMVEWLF---LLLSIFLVITFEIINSAIENVVDLASNYHFS--------MLAKNAKDMAAGAVLVVSLFAVLVGLIIFIPKILALLL----------------------
2X3M Chain:A ((71-236))
TNWADWIMGWRTPNASEKKMEFMYWYTRTYLEEAKDIRPDIADALARGMAGLAFGRTDWVASMLDPQIMRHIYTDPEVARIYSETRDMLRRVSDYYISLTTMELGKVADIIAEAKAKGENPEVVAREIAEAVPRLSPKSLYFNLYYIGRSIGDNYVLEVARVLSKM
General information:
TITO was launched using:
RESULT:
Template:
2X3M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114410 for 901 contacts (-127.0/contact) +
2D Compatibility (PS) -13627 + (NN) -6219 + (LL) 0
1D Compatibility (HY) -400 + (ID) 1350
Total energy: -136006.0 ( -150.95 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_2X3M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2X3M-query.scw
PDB file :
Tito_Scwrl_2X3M.pdb
: