Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKSKNLRAALEKIDSTKAYSVEEAVALAKE-TNFAKFDATVEVSYNL-NIDVKKADQQIRGAMVLPAGTGKTSRVLVFARGAKAEEAKAAGADFVGEDDLVAKI--QGGWLDFDVVIATPDMMALVGR-LGRVLGPRNLMPNPKTGTV--TMDVAKAVEESKGGKITYRADKAGNVQALIGKVSFDDAKLVDNFKAFNDVIVKAKPATAKGT-YITNLSITTTQGVGIKVDPNSL
487D Chain:H ((1-224))
-----KRYRALLEKVDPNKIYTIDEAAHLVKELA-TAKFDETVEVHAKLG-IDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILD--GWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGF--NIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKG-TFLRSVYVTTTMGPSVRINPHS-
General information:
TITO was launched using:
RESULT:
Template:
487D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116300 for 1653 contacts (-70.4/contact) +
2D Compatibility (PS) -24078 + (NN) -18881 + (LL) 728
1D Compatibility (HY) -15600 + (ID) 5350
Total energy: -179481.0 ( -108.58 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_487D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-487D-query.scw
PDB file :
Tito_Scwrl_487D.pdb
: