Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKQGEPDPESNSALKFVLDRAKQAQVPKHVIDKAIDKAKGNTDETFVEGRYEGFGPNGSMIIVDTLTSNVNRTAANVRTAYGKNGGNMGASGSVSYLFDKKGVIVFAGDDADTVFEQLLEADVDVDDVEAEEGTITVYTAPTDLHKGIQALRDNGVEEFQVTELEMIP--Q-S--EVVLEGDDLETFEKLIDALESDDDVQKVYHNVADF |
2PC6 Chain:A ((14-76)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------EAGALSRVAGLFSARG-YNIESLSVAPTEDPTLSRMTLVTNGPD-EIVEQITKQLNKLIEVVKLIDLSSEG |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PC6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 3358 for 293 contacts (11.5/contact) +
2D Compatibility (PS) -6478 + (NN) -3116 + (LL) 9956
1D Compatibility (HY) -2400 + (ID) 550
Total energy: 770.0 ( 2.63 by residue)
QMean score : 0.519
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