Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSRKKDKLVLRLTTTL----------LVFGLGGVWFYNYKN------DNVEPTVTSASDQTTTFIQTISPTAIEISKTYDL--------YASVLLAQAILESSSGQSDLSKAP--------------NYN---------LFGIKGEYKGKSVQMPTLEDDGKGNMTQIQAPFRAYPNYSAS-------LYDYAELVSS-------QKYASVWKSNTSSYKDATAALTGLYATDTAYASKLNQIIETYSLDAYDK-------------------------------- |
| 2VDW Chain:B ((1-287)) | -MDEIVKNIREGTHVLLPFYETLPELNLSLGKSPLPSLEYGANYFLQISRVNDLNRMPTDMLKLFTHDIMLPESDLDKVYEILKINSVKYYGRSTKADAVVADLSARNKLFKRERDAIKSTENNLYISDYKMLTFDVFRPLFDFVNE-KYCIIKLPTLF--GRGVIDTMRIYCSLFKNVRLLKCVSDSWLKDSAIMVASDVCKKNLDLFMSHVKSVTKSSSWKDVNSVQFSILNNPVDTEFINKFLEFSNRVYEALYYVHSLLYSSMTSDSKSIENKHQRRLVKLLL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2VDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -8858 for 1188 contacts (-7.5/contact) +
2D Compatibility (PS) -19555 + (NN) 2029 + (LL) 148
1D Compatibility (HY) -7600 + (ID) 1950
Total energy: -35786.0 ( -30.12 by residue)
QMean score : 0.021
|
|
|