Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MGFTDETVRFRLDDSNKVEISETLTAVYRSLEEKGYNPINQIVGYVLSGDPAYVPRYNDARNQIRKYERDEIVE-ELVRYYLQGNGIDL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2IZP Chain:A ((1030-1301))
AGARAMTDDDLRAA--GVDRRVPEQKLGAAIDEFAS--LRLPDRIDGRFVDGRRANLTVFDDARVAVRGHARAQRNLLERLETELLGGTLDTAGDEGGIQPDPILQGLVDVIGQGKSDIDAYATIVEGLTKYFQSVADVMSKLQDYISAKDDKNMKIDGGKIKALIQQVIDHLPTMQLPKGADIARWRKELGDAVSISDSGVVTINPDKLIKMRDSLPPDGTVWDTARYQAWNTAFSGQKDNIQNDVQTLVEKYSHQNSNFDNLVKVLSGAISTLT
General information:
TITO was launched using:
RESULT:
Template:
2IZP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 12913 for 434 contacts (29.8/contact) +
2D Compatibility (PS) -9117 + (NN) -3609 + (LL) -8
1D Compatibility (HY) 400 + (ID) 900
Total energy: -321.0 ( -0.74 by residue)
QMean score : 0.254
(partial model without unconserved sides chains):
PDB file :
Tito_2IZP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IZP-query.scw
PDB file :
Tito_Scwrl_2IZP.pdb
: