Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKKLVSSLLKCSLIIIVSFAGGAFASFVMNHNDNIPNGGVTKTSKVNYNNITPTTKAVKKVQNSVVSVINYKQQESRSDLSDFYSHFFGNQGGNTDKGLQVYGEGSGVIYKKDGKNAYVVTNNHVIDGAKQIEIQLADGSKAVGKLVGSDTYSDLAVVKIPSDKVSNIAEFADSSKLNIGETAIAIGSPLGTEYANSVTQGIVSSLKRTVTMTNEEGQTVSTNAIQTDAAINPGNSGGALINIEGQVIGINSSKISSTSNQTSGQSSGNSVEGMGFAIPSNDVVKIINQLESNGQVERPALGISMAGLSNLPSDVISKLKIPSNVTNGIVVASIQSGMPAQ-GKLKKYDVITKVDDKEVVSPSDLQSLLYGHQVGDSITVTFYRGENKQTVTIKLTKTSKDLAKQRANN |
3PV2 Chain:A ((6-341)) | ---------------------------------------------------MPSMAPVLKNIMPAIVNVAVQGYLPN----------------------RKFESIGSGVIIDPN--NGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAK-NLKSLVIGDSDKLEVGDFVVAIGNPFGL--SQSATFGIVSALK---------------NFIQTDAAINPGNSGGALVNAKGELIGINTAIL----------------VGIGFAIPINMVKDVAQQIIKFGSIHRGLMGIFVQHLTPEL---AQAMGYPE-DFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNN |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PV2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -109198 for 2385 contacts (-45.8/contact) +
2D Compatibility (PS) -30472 + (NN) -9730 + (LL) 3652
1D Compatibility (HY) -18800 + (ID) 4950
Total energy: -169498.0 ( -71.07 by residue)
QMean score : 0.501
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