Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPGAEAWQPTTDLASAGAFLYPARPLNDWDEIMLENTLERLETLVAELLQQNQALRDSHDQLQQQLRQATEENETLQLSMLEQEEKQSGTQARLEALVERLSAQQPVSA
2JEE Chain:A ((3-80))
--------------------------MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE------
General information:
TITO was launched using:
RESULT:
Template:
2JEE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 10700 for 315 contacts (34.0/contact) +
2D Compatibility (PS) -9129 + (NN) -7708 + (LL) 1696
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -6941.0 ( -22.03 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_2JEE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JEE-query.scw
PDB file :
Tito_Scwrl_2JEE.pdb
: