Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS
1BP2 Chain:A ((1-121))
----------------------ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNEITCSSENNACEAFICNCDRNAAICFSKVPYNKEHKNLDKK-----
General information:
TITO was launched using:
RESULT:
Template:
1BP2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61695 for 888 contacts (-69.5/contact) +
2D Compatibility (PS) -12584 + (NN) -6881 + (LL) 2520
1D Compatibility (HY) -16400 + (ID) 4800
Total energy: -99840.0 ( -112.43 by residue)
QMean score : 0.373
(partial model without unconserved sides chains):
PDB file :
Tito_1BP2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BP2-query.scw
PDB file :
Tito_Scwrl_1BP2.pdb
: