Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLLLLAVVIMAFGSIQVQGSLLEFGQMILFKTGKRADVSYGFYGCHCGVGGRGSPKDATDWCCVTHDCCYNRLEKRGCGTKFLTYKFSYRGGQISCSTNQDSCRKQLCQCDKAAAECFARNKKSYSLKYQFYPNKFCKGKTPSC
1MC2 Chain:A ((1-122))
---------------------SLFELGKMIWQETGKNPVKNYGLYGCNCGVGGRGEPLDATDRCCFVHKCCYKKL--TDCDSKKDRYSYKWKNKAIVCG-KNQPCMQEMCECDKAFAICLRENLDTYNKSFRYHLKPSCKKTSEQC
General information:
TITO was launched using:
RESULT:
Template:
1MC2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41627 for 912 contacts (-45.6/contact) +
2D Compatibility (PS) -13208 + (NN) -9076 + (LL) 2868
1D Compatibility (HY) -11200 + (ID) 2550
Total energy: -74793.0 ( -82.01 by residue)
QMean score : 0.259
(partial model without unconserved sides chains):
PDB file :
Tito_1MC2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MC2-query.scw
PDB file :
Tito_Scwrl_1MC2.pdb
: