Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKSCLLL
2GF0 Chain:A ((7-172))
-NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEW-KCAFMETSAKMNYNVKELFQELLTLETRR----------------
General information:
TITO was launched using:
RESULT:
Template:
2GF0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92808 for 1288 contacts (-72.1/contact) +
2D Compatibility (PS) -17898 + (NN) -4316 + (LL) 1376
1D Compatibility (HY) -16800 + (ID) 3600
Total energy: -134046.0 ( -104.07 by residue)
QMean score : 0.684
(partial model without unconserved sides chains):
PDB file :
Tito_2GF0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GF0-query.scw
PDB file :
Tito_Scwrl_2GF0.pdb
: