Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
4EPV Chain:A ((2-170))
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK--------------------
General information:
TITO was launched using:
RESULT:
Template:
4EPV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88821 for 1359 contacts (-65.4/contact) +
2D Compatibility (PS) -18649 + (NN) -7966 + (LL) 1632
1D Compatibility (HY) -21600 + (ID) 8100
Total energy: -143504.0 ( -105.60 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_4EPV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EPV-query.scw
PDB file :
Tito_Scwrl_4EPV.pdb
: