Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERPQPDSMPQDLSEALKEATKEVHTQAENAEFMRNFQKGQVTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYGPRWQEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTHDTKDQSPSRAPGLRQRASNKVQDSAPVETPRGKPPLNTRSQAPLLRWVLTLSFLVATVAVGLYAM
4G99 Chain:A ((11-222))
----------QDLSEALKEATKEVHIRAENSEFMRNFQKGQVSREGFKLVMASLYHIYTALEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQEAIPYTPATQHYVKRLHEVGGTHPELLVAHAYTRYLGDLSGGQVLKKIAQKAMALPSSGEGLAFFTFPSIDNPTKFKQLYRARMNTLEMTPEVKHRVTEEAKTAFLLNIELFEELQALLT------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4G99.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104550 for 1670 contacts (-62.6/contact) +
2D Compatibility (PS) -23454 + (NN) -20163 + (LL) 4000
1D Compatibility (HY) -26000 + (ID) 9000
Total energy: -179167.0 ( -107.29 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_4G99.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G99-query.scw
PDB file :
Tito_Scwrl_4G99.pdb
: